Index A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | R | S | T | U | V | W A aliases (mescla.prep.units.Ion attribute) apply_axes_style() (in module mescla.plotting.theme) archetypal_analysis() (in module mescla.emma.archetypes) archetype_rss_curve() (in module mescla.emma.archetypes) archetype_stability() (in module mescla.emma.archetypes) ArchetypeResult (class in mescla.emma.archetypes) archetypes (mescla.emma.archetypes.ArchetypeResult attribute) archetypes() (mescla.emma.model.EMMA method) archetypes_frame() (mescla.emma.archetypes.ArchetypeResult method) as_endmembers() (mescla.emma.archetypes.ArchetypeResult method) axis (mescla.plotting.theme.Theme attribute) B barycentric_coordinates() (in module mescla.emma.endmembers) BesosEndMembers (class in mescla.datasets.loaders) bootstrap_endmembers() (in module mescla.uncertainty.resampling) broken_stick() (in module mescla.emma.rank) C cache_dir() (in module mescla.datasets.loaders) carrera_application1() (in module mescla.datasets.synthetic) carrera_application2() (in module mescla.datasets.synthetic) carrier_for() (in module mescla.isotopes) censored (mescla.types.ChemTable attribute) center (mescla.types.EMMAResult attribute) center_ (mescla.prep.transform.Standardizer attribute) charge (mescla.prep.units.Ion attribute) charge_balance_error() (in module mescla.prep.qaqc) charge_balance_report() (in module mescla.prep.qaqc) check_isotopes() (in module mescla.isotopes) ChemTable (class in mescla.types) classify_source_sink() (in module mescla.reactions.residuals) common_unit (mescla.types.ChemTable property) complete_species() (in module mescla.prep.missing) components (mescla.types.EMMAResult property) condition_number() (in module mescla.uncertainty.identifiability) conservative (mescla.datasets.loaders.BesosEndMembers attribute) conservative_only() (mescla.datasets.loaders.BesosEndMembers method) converged (mescla.emma.archetypes.ArchetypeResult attribute) (mescla.types.MixingResult attribute) conversion_factors() (in module mescla.prep.units) critical (mescla.plotting.theme.Theme attribute) cross_site_projection() (in module mescla.emma.diagnostics) cumulative_variance_rule() (in module mescla.emma.rank) D data (mescla.types.ChemTable attribute) delinearize() (in module mescla.isotopes) delta_method() (in module mescla.uncertainty.propagation) description (mescla.datasets.synthetic.SyntheticMixture attribute) details (mescla.types.DiagnosticsReport attribute) detection_limit_report() (in module mescla.prep.qaqc) diagnostics (mescla.emma.archetypes.ArchetypeResult attribute) (mescla.types.MixingResult attribute) diagnostics() (mescla.emma.model.EMMA method) DiagnosticsReport (class in mescla.types) diverging (mescla.plotting.theme.Theme attribute) drop_incomplete_samples() (in module mescla.prep.missing) drop_species() (mescla.types.ChemTable method) E ec_check() (in module mescla.prep.qaqc) ec_from_ions() (in module mescla.prep.qaqc) eigen_decomposition() (in module mescla.emma.pca) EigenStructure (class in mescla.emma.pca) eigenvalues (mescla.emma.pca.EigenStructure attribute) (mescla.types.EMMAResult attribute) eigenvalues_ (mescla.emma.model.EMMA property) eigenvectors (mescla.emma.pca.EigenStructure attribute) EMMA (class in mescla.emma.model) emma() (in module mescla.emma.model) EMMAResult (class in mescla.types) endmember_separation() (in module mescla.uncertainty.identifiability) endmember_shift_ (mescla.mixing.ml.MixML property) endmember_shift_frame() (mescla.mixing.ml.MixML method) EndMembers (class in mescla.types) endmembers (mescla.datasets.loaders.BesosEndMembers attribute) (mescla.datasets.synthetic.SyntheticMixture attribute) (mescla.types.MixingResult attribute) endmembers_ (mescla.mixing.ml.MixML property) equivalent_weight (mescla.prep.units.Ion property) equivalent_weight() (in module mescla.prep.units) explained_variance (mescla.emma.archetypes.ArchetypeResult property) explained_variance_ratio (mescla.emma.pca.EigenStructure property) (mescla.types.EMMAResult property) F fetch_water_quality_portal() (in module mescla.datasets.loaders) fit() (mescla.emma.model.EMMA method) (mescla.mixing.ml.MixML method) (mescla.prep.transform.Standardizer method) fit_conservative() (in module mescla.reactions.residuals) fit_transform() (mescla.prep.transform.Standardizer method) fitted (mescla.types.EMMAResult attribute) (mescla.types.MixingResult attribute) fitted_ (mescla.emma.model.EMMA property) from_frame() (mescla.types.ChemTable class method) G genereux_sigma() (in module mescla.uncertainty.propagation) get_theme() (in module mescla.plotting.theme) good (mescla.plotting.theme.Theme attribute) grid (mescla.plotting.theme.Theme attribute) H hooper_diagnostics() (in module mescla.emma.diagnostics) hull_fraction (mescla.emma.archetypes.ArchetypeResult attribute) hull_fraction() (in module mescla.emma.endmembers) (mescla.emma.model.EMMA method) I identifiability_report() (in module mescla.uncertainty.identifiability) improvement_index() (in module mescla.mixing.ml) impute_below_detection() (in module mescla.prep.missing) in_hull() (in module mescla.emma.endmembers) index (mescla.types.ChemTable attribute) (mescla.types.EMMAResult attribute) ink (mescla.plotting.theme.Theme attribute) ink_muted (mescla.plotting.theme.Theme attribute) ink_secondary (mescla.plotting.theme.Theme attribute) inverse_transform() (mescla.emma.model.EMMA method) (mescla.prep.transform.Standardizer method) Ion (class in mescla.prep.units) is_complete (mescla.types.ChemTable property) is_homogeneous (mescla.types.ChemTable property) is_water_isotope() (in module mescla.isotopes) J jackknife_endmembers() (in module mescla.uncertainty.resampling) K k (mescla.emma.model.EMMA property) (mescla.types.EMMAResult attribute) L labels (mescla.types.EndMembers property) largest_complete_block() (in module mescla.prep.missing) linearize() (in module mescla.isotopes) load_grafton_nh() (in module mescla.datasets.loaders) load_grafton_nh_frame() (in module mescla.datasets.loaders) load_hubbard_brook() (in module mescla.datasets.loaders) load_hubbard_brook_frame() (in module mescla.datasets.loaders) load_tubau_besos() (in module mescla.datasets.loaders) loadings (mescla.types.EMMAResult attribute) loadings_frame() (mescla.emma.model.EMMA method) (mescla.types.EMMAResult method) lookup_ion() (in module mescla.prep.units) M make_mixture() (in module mescla.datasets.synthetic) mean_ratios() (mescla.types.MixingResult method) measured_vs_predicted() (in module mescla.reactions.residuals) mescla.datasets.loaders module mescla.datasets.synthetic module mescla.emma.archetypes module mescla.emma.diagnostics module mescla.emma.endmembers module mescla.emma.model module mescla.emma.pca module mescla.emma.projection module mescla.emma.rank module mescla.isotopes module mescla.mixing.geometric module mescla.mixing.lsq module mescla.mixing.ml module mescla.plotting.diagrams module mescla.plotting.theme module mescla.prep.missing module mescla.prep.qaqc module mescla.prep.transform module mescla.prep.units module mescla.reactions.residuals module mescla.types module mescla.uncertainty.identifiability module mescla.uncertainty.montecarlo module mescla.uncertainty.propagation module mescla.uncertainty.resampling module method (mescla.types.MixingResult attribute) missing_data_report() (in module mescla.prep.qaqc) missing_summary() (in module mescla.prep.missing) mix_isotope() (in module mescla.isotopes) mix_ml() (in module mescla.mixing.ml) mixing_ratios() (in module mescla.mixing.lsq) MixingResult (class in mescla.types) MixML (class in mescla.mixing.ml) module mescla.datasets.loaders mescla.datasets.synthetic mescla.emma.archetypes mescla.emma.diagnostics mescla.emma.endmembers mescla.emma.model mescla.emma.pca mescla.emma.projection mescla.emma.rank mescla.isotopes mescla.mixing.geometric mescla.mixing.lsq mescla.mixing.ml mescla.plotting.diagrams mescla.plotting.theme mescla.prep.missing mescla.prep.qaqc mescla.prep.transform mescla.prep.units mescla.reactions.residuals mescla.types mescla.uncertainty.identifiability mescla.uncertainty.montecarlo mescla.uncertainty.propagation mescla.uncertainty.resampling molar_mass (mescla.prep.units.Ion attribute) monte_carlo_ratios() (in module mescla.uncertainty.montecarlo) N n_archetypes (mescla.emma.archetypes.ArchetypeResult property) n_censored (mescla.types.ChemTable property) n_endmembers (mescla.datasets.synthetic.SyntheticMixture property) (mescla.emma.model.EMMA property) (mescla.types.EMMAResult property) (mescla.types.EndMembers property) (mescla.types.MixingResult property) n_iter (mescla.emma.archetypes.ArchetypeResult attribute) n_missing (mescla.types.ChemTable property) n_rows (mescla.types.ChemTable property) n_samples (mescla.datasets.synthetic.SyntheticMixture property) n_species (mescla.types.ChemTable property) name (mescla.plotting.theme.Theme attribute) negative_species() (mescla.emma.archetypes.ArchetypeResult method) neutral (mescla.plotting.theme.Theme attribute) O objective (mescla.types.MixingResult attribute) P parallel_analysis() (in module mescla.emma.rank) plot_loadings() (in module mescla.plotting.diagrams) plot_measured_vs_predicted() (in module mescla.plotting.diagrams) plot_mixing_line() (in module mescla.plotting.diagrams) plot_ratios() (in module mescla.plotting.diagrams) plot_ratios_with_uncertainty() (in module mescla.plotting.diagrams) plot_reaction_departures() (in module mescla.plotting.diagrams) plot_residuals() (in module mescla.plotting.diagrams) plot_scree() (in module mescla.plotting.diagrams) plot_ternary() (in module mescla.plotting.diagrams) plot_uspace() (in module mescla.plotting.diagrams) poor_species() (mescla.types.DiagnosticsReport method) profile_objective() (in module mescla.mixing.ml) project() (mescla.emma.model.EMMA method) project_endmembers() (in module mescla.emma.projection) project_to_subspace() (in module mescla.emma.projection) published_ratios (mescla.datasets.loaders.BesosEndMembers attribute) R rank_candidates() (in module mescla.emma.endmembers) rank_summary() (in module mescla.emma.rank) (mescla.emma.model.EMMA method) ratios (mescla.emma.archetypes.ArchetypeResult property) (mescla.types.MixingResult attribute) ratios_ (mescla.mixing.ml.MixML property) ratios_frame() (mescla.mixing.ml.MixML method) (mescla.types.MixingResult method) reaction_report() (in module mescla.reactions.residuals) relative_bias (mescla.types.DiagnosticsReport attribute) residual_structure() (mescla.emma.model.EMMA method) residual_structure_test() (in module mescla.emma.diagnostics) residuals (mescla.types.MixingResult attribute) residuals_ (mescla.emma.model.EMMA property) restart_rss (mescla.emma.archetypes.ArchetypeResult attribute) restarts_at_best (mescla.emma.archetypes.ArchetypeResult property) rrmse (mescla.types.DiagnosticsReport attribute) rss (mescla.emma.archetypes.ArchetypeResult attribute) rule_of_one() (in module mescla.emma.rank) S safe_series (mescla.plotting.theme.Theme property) samples (mescla.datasets.synthetic.SyntheticMixture attribute) (mescla.emma.archetypes.ArchetypeResult attribute) (mescla.types.MixingResult attribute) (mescla.types.WaterChemistry property) scale (mescla.types.EMMAResult attribute) scale_ (mescla.prep.transform.Standardizer attribute) scores (mescla.types.EMMAResult attribute) scores_ (mescla.emma.model.EMMA property) scores_frame() (mescla.types.EMMAResult method) screen_candidates() (mescla.emma.model.EMMA method) sd_endmembers (mescla.datasets.loaders.BesosEndMembers attribute) sd_factor_groundwater (mescla.datasets.loaders.BesosEndMembers attribute) sd_factor_river (mescla.datasets.loaders.BesosEndMembers attribute) seed (mescla.emma.archetypes.ArchetypeResult attribute) select_rows() (mescla.types.ChemTable method) select_species() (mescla.types.ChemTable method) sequential (mescla.plotting.theme.Theme attribute) series (mescla.plotting.theme.Theme attribute) series_color() (in module mescla.plotting.theme) shape (mescla.types.ChemTable property) sigma (mescla.types.ChemTable attribute) sigma_frame() (mescla.types.ChemTable method) sigma_sweep() (in module mescla.uncertainty.identifiability) solve_ratios() (in module mescla.mixing.lsq) space (mescla.emma.archetypes.ArchetypeResult attribute) species (mescla.emma.archetypes.ArchetypeResult attribute) (mescla.emma.pca.EigenStructure attribute) (mescla.types.ChemTable attribute) (mescla.types.DiagnosticsReport attribute) (mescla.types.EMMAResult attribute) species_ (mescla.prep.transform.Standardizer attribute) standardize (mescla.prep.transform.Standardizer attribute) (mescla.types.EMMAResult attribute) Standardizer (class in mescla.prep.transform) subspace_distance() (in module mescla.emma.projection) (mescla.emma.model.EMMA method) suggest_endmembers() (in module mescla.emma.endmembers) (mescla.emma.model.EMMA method) summary() (mescla.emma.archetypes.ArchetypeResult method) (mescla.emma.model.EMMA method) support (mescla.emma.archetypes.ArchetypeResult attribute) support_frame() (mescla.emma.archetypes.ArchetypeResult method) surface (mescla.plotting.theme.Theme attribute) symbol (mescla.prep.units.Ion attribute) SyntheticMixture (class in mescla.datasets.synthetic) T table (mescla.datasets.loaders.BesosEndMembers attribute) Theme (class in mescla.plotting.theme) three_component() (in module mescla.mixing.geometric) to_frame() (mescla.emma.pca.EigenStructure method) (mescla.types.ChemTable method) (mescla.types.DiagnosticsReport method) to_meq_per_l() (in module mescla.prep.units) to_mmol_per_l() (in module mescla.prep.units) transform() (mescla.emma.model.EMMA method) (mescla.prep.transform.Standardizer method) true_endmembers (mescla.datasets.synthetic.SyntheticMixture attribute) true_ratios (mescla.datasets.synthetic.SyntheticMixture attribute) true_ratios_frame() (mescla.datasets.synthetic.SyntheticMixture method) true_samples (mescla.datasets.synthetic.SyntheticMixture attribute) tss (mescla.emma.archetypes.ArchetypeResult attribute) two_component() (in module mescla.mixing.geometric) two_component_isotope() (in module mescla.isotopes) two_component_uncertainty() (in module mescla.uncertainty.propagation) U u_space() (in module mescla.emma.projection) unit_of() (mescla.types.ChemTable method) units (mescla.types.ChemTable attribute) units_dict() (mescla.types.ChemTable method) uspace_solve() (in module mescla.mixing.geometric) V verdict (mescla.types.DiagnosticsReport attribute) W warning (mescla.plotting.theme.Theme attribute) WaterChemistry (class in mescla.types) weights (mescla.emma.archetypes.ArchetypeResult attribute) weights_frame() (mescla.emma.archetypes.ArchetypeResult method) with_units() (mescla.types.ChemTable method)